The corpus data for idiopathic pulmonary fibrosis (IPF) in brat format, which will be used for text-mining system

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The network for the brat data will be shutdown for several minutes during the following periods:
3 hours between 10:00 J.S.T. March 4 and 18:00 J.S.T. March 4, 2025.
Sorry for inconvenience.

Please cite the following paper:
Nagano, N., Tokunaga, N., Ikeda, M. et al. A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis. Sci Rep 13, 5986 (2023). doi: 10.1038/s41598-023-32915-8


Regarding the license, please see the following site:
License for the IPF corpus

The links:
annotation config file for brat
visual config file for brat


Moreover, this corpus for IPF was used to develop the following tools:
Tool of Named Entity Recognition for lung diseases
Tool of Entity Linking for lung diseases
Tool of Relation Extraction for lung diseases
Tool of Event Extraction for lung diseases
These tools may be useful for researchers and medical doctors for lung diseases.

Each data:
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Abstract for 11215419 Annotation for 11215419 Brat for 11215419
Abstract for 11321887 Annotation for 11321887 Brat for 11321887
Abstract for 11491168 Annotation for 11491168 Brat for 11491168
Abstract for 11510099 Annotation for 11510099 Brat for 11510099
Abstract for 11589350 Annotation for 11589350 Brat for 11589350
Abstract for 11806840 Annotation for 11806840 Brat for 11806840
Abstract for 11806848 Annotation for 11806848 Brat for 11806848
Abstract for 11896896 Annotation for 11896896 Brat for 11896896
Abstract for 15298857 Annotation for 15298857 Brat for 15298857
Abstract for 15316031 Annotation for 15316031 Brat for 15316031
Abstract for 15546394 Annotation for 15546394 Brat for 15546394
Abstract for 15946381 Annotation for 15946381 Brat for 15946381
Abstract for 16042790 Annotation for 16042790 Brat for 16042790
Abstract for 16128620 Annotation for 16128620 Brat for 16128620
Abstract for 16776827 Annotation for 16776827 Brat for 16776827
Abstract for 16837501 Annotation for 16837501 Brat for 16837501
Abstract for 19281539 Annotation for 19281539 Brat for 19281539
Abstract for 19535235 Annotation for 19535235 Brat for 19535235
Abstract for 19816001 Annotation for 19816001 Brat for 19816001
Abstract for 20066538 Annotation for 20066538 Brat for 20066538
Abstract for 20126467 Annotation for 20126467 Brat for 20126467
Abstract for 20169073 Annotation for 20169073 Brat for 20169073
Abstract for 20169144 Annotation for 20169144 Brat for 20169144
Abstract for 20300636 Annotation for 20300636 Brat for 20300636
Abstract for 20360623 Annotation for 20360623 Brat for 20360623
Abstract for 20418386 Annotation for 20418386 Brat for 20418386
Abstract for 20560295 Annotation for 20560295 Brat for 20560295
Abstract for 20670133 Annotation for 20670133 Brat for 20670133
Abstract for 20738867 Annotation for 20738867 Brat for 20738867
Abstract for 20979817 Annotation for 20979817 Brat for 20979817
Abstract for 21067601 Annotation for 21067601 Brat for 21067601
Abstract for 21284856 Annotation for 21284856 Brat for 21284856
Abstract for 22037258 Annotation for 22037258 Brat for 22037258
Abstract for 23108733 Annotation for 23108733 Brat for 23108733
Abstract for 23168584 Annotation for 23168584 Brat for 23168584
Abstract for 23244165 Annotation for 23244165 Brat for 23244165
Abstract for 23259796 Annotation for 23259796 Brat for 23259796
Abstract for 23262513 Annotation for 23262513 Brat for 23262513
Abstract for 23378460 Annotation for 23378460 Brat for 23378460
Abstract for 23435730 Annotation for 23435730 Brat for 23435730
Abstract for 23440593 Annotation for 23440593 Brat for 23440593
Abstract for 23487425 Annotation for 23487425 Brat for 23487425
Abstract for 23496780 Annotation for 23496780 Brat for 23496780
Abstract for 23537541 Annotation for 23537541 Brat for 23537541
Abstract for 23549736 Annotation for 23549736 Brat for 23549736
Abstract for 23557396 Annotation for 23557396 Brat for 23557396
Abstract for 23697753 Annotation for 23697753 Brat for 23697753
Abstract for 23715088 Annotation for 23715088 Brat for 23715088
Abstract for 23741267 Annotation for 23741267 Brat for 23741267
Abstract for 23872052 Annotation for 23872052 Brat for 23872052
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Abstract for 23915349 Annotation for 23915349 Brat for 23915349
Abstract for 23967151 Annotation for 23967151 Brat for 23967151
Abstract for 23986222 Annotation for 23986222 Brat for 23986222
Abstract for 24283478 Annotation for 24283478 Brat for 24283478
Abstract for 24728102 Annotation for 24728102 Brat for 24728102
Abstract for 24828408 Annotation for 24828408 Brat for 24828408
Abstract for 25162417 Annotation for 25162417 Brat for 25162417
Abstract for 25358403 Annotation for 25358403 Brat for 25358403
Abstract for 25775215 Annotation for 25775215 Brat for 25775215
Abstract for 26121236 Annotation for 26121236 Brat for 26121236
Abstract for 26138239 Annotation for 26138239 Brat for 26138239
Abstract for 26153764 Annotation for 26153764 Brat for 26153764
Abstract for 26164539 Annotation for 26164539 Brat for 26164539
Abstract for 26231926 Annotation for 26231926 Brat for 26231926
Abstract for 27071460 Annotation for 27071460 Brat for 27071460
Abstract for 27107963 Annotation for 27107963 Brat for 27107963
Abstract for 27215503 Annotation for 27215503 Brat for 27215503
Abstract for 27486656 Annotation for 27486656 Brat for 27486656
Abstract for 27815256 Annotation for 27815256 Brat for 27815256
Abstract for 28005429 Annotation for 28005429 Brat for 28005429
Abstract for 28012488 Annotation for 28012488 Brat for 28012488
Abstract for 28060543 Annotation for 28060543 Brat for 28060543
Abstract for 28081703 Annotation for 28081703 Brat for 28081703
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Abstract for 28202030 Annotation for 28202030 Brat for 28202030
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Abstract for 28332341 Annotation for 28332341 Brat for 28332341
Abstract for 28353114 Annotation for 28353114 Brat for 28353114
Abstract for 28355256 Annotation for 28355256 Brat for 28355256
Abstract for 28356570 Annotation for 28356570 Brat for 28356570
Abstract for 28435843 Annotation for 28435843 Brat for 28435843
Abstract for 28440314 Annotation for 28440314 Brat for 28440314
Abstract for 28455433 Annotation for 28455433 Brat for 28455433
Abstract for 28464801 Annotation for 28464801 Brat for 28464801
Abstract for 28467516 Annotation for 28467516 Brat for 28467516
Abstract for 28484236 Annotation for 28484236 Brat for 28484236
Abstract for 28501346 Annotation for 28501346 Brat for 28501346
Abstract for 28554260 Annotation for 28554260 Brat for 28554260
Abstract for 28570100 Annotation for 28570100 Brat for 28570100
Abstract for 28591049 Annotation for 28591049 Brat for 28591049
Abstract for 28596432 Annotation for 28596432 Brat for 28596432
Abstract for 28619094 Annotation for 28619094 Brat for 28619094
Abstract for 28629363 Annotation for 28629363 Brat for 28629363
Abstract for 28642621 Annotation for 28642621 Brat for 28642621
Abstract for 28787186 Annotation for 28787186 Brat for 28787186
Abstract for 28814671 Annotation for 28814671 Brat for 28814671
Abstract for 28821283 Annotation for 28821283 Brat for 28821283
Abstract for 28847533 Annotation for 28847533 Brat for 28847533
Abstract for 28860143 Annotation for 28860143 Brat for 28860143
Abstract for 28875146 Annotation for 28875146 Brat for 28875146
Abstract for 28886713 Annotation for 28886713 Brat for 28886713
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Abstract for 28986417 Annotation for 28986417 Brat for 28986417
Abstract for 28987380 Annotation for 28987380 Brat for 28987380
Abstract for 28993806 Annotation for 28993806 Brat for 28993806
Abstract for 29053339 Annotation for 29053339 Brat for 29053339
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Abstract for 29321510 Annotation for 29321510 Brat for 29321510
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Abstract for 29348469 Annotation for 29348469 Brat for 29348469
Abstract for 29363258 Annotation for 29363258 Brat for 29363258
Abstract for 29409529 Annotation for 29409529 Brat for 29409529
Abstract for 29445374 Annotation for 29445374 Brat for 29445374
Abstract for 29471816 Annotation for 29471816 Brat for 29471816
Abstract for 29499695 Annotation for 29499695 Brat for 29499695
Abstract for 29517586 Annotation for 29517586 Brat for 29517586
Abstract for 29518028 Annotation for 29518028 Brat for 29518028
Abstract for 29563341 Annotation for 29563341 Brat for 29563341
Abstract for 29565815 Annotation for 29565815 Brat for 29565815
Abstract for 29587761 Annotation for 29587761 Brat for 29587761
Abstract for 29616048 Annotation for 29616048 Brat for 29616048
Abstract for 29616220 Annotation for 29616220 Brat for 29616220
Abstract for 29670467 Annotation for 29670467 Brat for 29670467
Abstract for 29670881 Annotation for 29670881 Brat for 29670881
Abstract for 29704504 Annotation for 29704504 Brat for 29704504
Abstract for 29719620 Annotation for 29719620 Brat for 29719620
Abstract for 29722558 Annotation for 29722558 Brat for 29722558
Abstract for 7582298 Annotation for 7582298 Brat for 7582298
Abstract for 7921434 Annotation for 7921434 Brat for 7921434
Abstract for 8118632 Annotation for 8118632 Brat for 8118632
Abstract for 8680382 Annotation for 8680382 Brat for 8680382
Abstract for 8941660 Annotation for 8941660 Brat for 8941660
Abstract for 9010273 Annotation for 9010273 Brat for 9010273
Abstract for 9097917 Annotation for 9097917 Brat for 9097917
Abstract for 9233641 Annotation for 9233641 Brat for 9233641
Abstract for 9395718 Annotation for 9395718 Brat for 9395718
Abstract for 9517588 Annotation for 9517588 Brat for 9517588
Abstract for 9616535 Annotation for 9616535 Brat for 9616535
Abstract for 9676055 Annotation for 9676055 Brat for 9676055


This work was supported by the Public/Private R&D Investment Strategic Expansion PrograM (PRISM) in Japan.

Copyright: Artificial Intelligence Research Center (AIRC), National Institute of Advanced Industrial Science and Technology(AIST)