The corpus data for idiopathic pulmonary fibrosis (IPF) in brat format, which will be used for text-mining system
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The server for the brat data will be shutdown during the following periods:
from 15:00 J.S.T May 31 to 15:00 J.S.T June 21 2024.
Sorry for inconvenience.
Please cite the following paper:
Nagano, N., Tokunaga, N., Ikeda, M. et al. A novel corpus of molecular to higher-order events that facilitates the understanding of the pathogenic mechanisms of idiopathic pulmonary fibrosis. Sci Rep 13, 5986 (2023).
doi: 10.1038/s41598-023-32915-8
The links:
annotation config file for brat
visual config file for brat
Moreover, this corpus for IPF was used to develop the following tools:
Tool of Named Entity Recognition for lung diseases
Tool of Entity Linking for lung diseases
Tool of Relation Extraction for lung diseases
Tool of Event Extraction for lung diseases
These tools may be useful for researchers and medical doctors for lung diseases.
Each data:
Abstract for 11031344
Annotation for 11031344
Brat for 11031344
Abstract for 11215419
Annotation for 11215419
Brat for 11215419
Abstract for 11321887
Annotation for 11321887
Brat for 11321887
Abstract for 11491168
Annotation for 11491168
Brat for 11491168
Abstract for 11510099
Annotation for 11510099
Brat for 11510099
Abstract for 11589350
Annotation for 11589350
Brat for 11589350
Abstract for 11806840
Annotation for 11806840
Brat for 11806840
Abstract for 11806848
Annotation for 11806848
Brat for 11806848
Abstract for 11896896
Annotation for 11896896
Brat for 11896896
Abstract for 15298857
Annotation for 15298857
Brat for 15298857
Abstract for 15316031
Annotation for 15316031
Brat for 15316031
Abstract for 15546394
Annotation for 15546394
Brat for 15546394
Abstract for 15946381
Annotation for 15946381
Brat for 15946381
Abstract for 16042790
Annotation for 16042790
Brat for 16042790
Abstract for 16128620
Annotation for 16128620
Brat for 16128620
Abstract for 16776827
Annotation for 16776827
Brat for 16776827
Abstract for 16837501
Annotation for 16837501
Brat for 16837501
Abstract for 19281539
Annotation for 19281539
Brat for 19281539
Abstract for 19535235
Annotation for 19535235
Brat for 19535235
Abstract for 19816001
Annotation for 19816001
Brat for 19816001
Abstract for 20066538
Annotation for 20066538
Brat for 20066538
Abstract for 20126467
Annotation for 20126467
Brat for 20126467
Abstract for 20169073
Annotation for 20169073
Brat for 20169073
Abstract for 20169144
Annotation for 20169144
Brat for 20169144
Abstract for 20300636
Annotation for 20300636
Brat for 20300636
Abstract for 20360623
Annotation for 20360623
Brat for 20360623
Abstract for 20418386
Annotation for 20418386
Brat for 20418386
Abstract for 20560295
Annotation for 20560295
Brat for 20560295
Abstract for 20670133
Annotation for 20670133
Brat for 20670133
Abstract for 20738867
Annotation for 20738867
Brat for 20738867
Abstract for 20979817
Annotation for 20979817
Brat for 20979817
Abstract for 21067601
Annotation for 21067601
Brat for 21067601
Abstract for 21284856
Annotation for 21284856
Brat for 21284856
Abstract for 22037258
Annotation for 22037258
Brat for 22037258
Abstract for 23108733
Annotation for 23108733
Brat for 23108733
Abstract for 23168584
Annotation for 23168584
Brat for 23168584
Abstract for 23244165
Annotation for 23244165
Brat for 23244165
Abstract for 23259796
Annotation for 23259796
Brat for 23259796
Abstract for 23262513
Annotation for 23262513
Brat for 23262513
Abstract for 23378460
Annotation for 23378460
Brat for 23378460
Abstract for 23435730
Annotation for 23435730
Brat for 23435730
Abstract for 23440593
Annotation for 23440593
Brat for 23440593
Abstract for 23487425
Annotation for 23487425
Brat for 23487425
Abstract for 23496780
Annotation for 23496780
Brat for 23496780
Abstract for 23537541
Annotation for 23537541
Brat for 23537541
Abstract for 23549736
Annotation for 23549736
Brat for 23549736
Abstract for 23557396
Annotation for 23557396
Brat for 23557396
Abstract for 23697753
Annotation for 23697753
Brat for 23697753
Abstract for 23715088
Annotation for 23715088
Brat for 23715088
Abstract for 23741267
Annotation for 23741267
Brat for 23741267
Abstract for 23872052
Annotation for 23872052
Brat for 23872052
Abstract for 23902766
Annotation for 23902766
Brat for 23902766
Abstract for 23915349
Annotation for 23915349
Brat for 23915349
Abstract for 23967151
Annotation for 23967151
Brat for 23967151
Abstract for 23986222
Annotation for 23986222
Brat for 23986222
Abstract for 24283478
Annotation for 24283478
Brat for 24283478
Abstract for 24728102
Annotation for 24728102
Brat for 24728102
Abstract for 24828408
Annotation for 24828408
Brat for 24828408
Abstract for 25162417
Annotation for 25162417
Brat for 25162417
Abstract for 25358403
Annotation for 25358403
Brat for 25358403
Abstract for 25775215
Annotation for 25775215
Brat for 25775215
Abstract for 26121236
Annotation for 26121236
Brat for 26121236
Abstract for 26138239
Annotation for 26138239
Brat for 26138239
Abstract for 26153764
Annotation for 26153764
Brat for 26153764
Abstract for 26164539
Annotation for 26164539
Brat for 26164539
Abstract for 26231926
Annotation for 26231926
Brat for 26231926
Abstract for 27071460
Annotation for 27071460
Brat for 27071460
Abstract for 27107963
Annotation for 27107963
Brat for 27107963
Abstract for 27215503
Annotation for 27215503
Brat for 27215503
Abstract for 27486656
Annotation for 27486656
Brat for 27486656
Abstract for 27815256
Annotation for 27815256
Brat for 27815256
Abstract for 28005429
Annotation for 28005429
Brat for 28005429
Abstract for 28012488
Annotation for 28012488
Brat for 28012488
Abstract for 28060543
Annotation for 28060543
Brat for 28060543
Abstract for 28081703
Annotation for 28081703
Brat for 28081703
Abstract for 28128990
Annotation for 28128990
Brat for 28128990
Abstract for 28149325
Annotation for 28149325
Brat for 28149325
Abstract for 28178340
Annotation for 28178340
Brat for 28178340
Abstract for 28202030
Annotation for 28202030
Brat for 28202030
Abstract for 28273952
Annotation for 28273952
Brat for 28273952
Abstract for 28298912
Annotation for 28298912
Brat for 28298912
Abstract for 28332341
Annotation for 28332341
Brat for 28332341
Abstract for 28353114
Annotation for 28353114
Brat for 28353114
Abstract for 28355256
Annotation for 28355256
Brat for 28355256
Abstract for 28356570
Annotation for 28356570
Brat for 28356570
Abstract for 28435843
Annotation for 28435843
Brat for 28435843
Abstract for 28440314
Annotation for 28440314
Brat for 28440314
Abstract for 28455433
Annotation for 28455433
Brat for 28455433
Abstract for 28464801
Annotation for 28464801
Brat for 28464801
Abstract for 28467516
Annotation for 28467516
Brat for 28467516
Abstract for 28484236
Annotation for 28484236
Brat for 28484236
Abstract for 28501346
Annotation for 28501346
Brat for 28501346
Abstract for 28554260
Annotation for 28554260
Brat for 28554260
Abstract for 28570100
Annotation for 28570100
Brat for 28570100
Abstract for 28591049
Annotation for 28591049
Brat for 28591049
Abstract for 28596432
Annotation for 28596432
Brat for 28596432
Abstract for 28619094
Annotation for 28619094
Brat for 28619094
Abstract for 28629363
Annotation for 28629363
Brat for 28629363
Abstract for 28642621
Annotation for 28642621
Brat for 28642621
Abstract for 28787186
Annotation for 28787186
Brat for 28787186
Abstract for 28814671
Annotation for 28814671
Brat for 28814671
Abstract for 28821283
Annotation for 28821283
Brat for 28821283
Abstract for 28847533
Annotation for 28847533
Brat for 28847533
Abstract for 28860143
Annotation for 28860143
Brat for 28860143
Abstract for 28875146
Annotation for 28875146
Brat for 28875146
Abstract for 28886713
Annotation for 28886713
Brat for 28886713
Abstract for 28944926
Annotation for 28944926
Brat for 28944926
Abstract for 28986417
Annotation for 28986417
Brat for 28986417
Abstract for 28987380
Annotation for 28987380
Brat for 28987380
Abstract for 28993806
Annotation for 28993806
Brat for 28993806
Abstract for 29053339
Annotation for 29053339
Brat for 29053339
Abstract for 29066090
Annotation for 29066090
Brat for 29066090
Abstract for 29075197
Annotation for 29075197
Brat for 29075197
Abstract for 29109947
Annotation for 29109947
Brat for 29109947
Abstract for 29125826
Annotation for 29125826
Brat for 29125826
Abstract for 29130366
Annotation for 29130366
Brat for 29130366
Abstract for 29144435
Annotation for 29144435
Brat for 29144435
Abstract for 29149883
Annotation for 29149883
Brat for 29149883
Abstract for 29321510
Annotation for 29321510
Brat for 29321510
Abstract for 29347981
Annotation for 29347981
Brat for 29347981
Abstract for 29348469
Annotation for 29348469
Brat for 29348469
Abstract for 29363258
Annotation for 29363258
Brat for 29363258
Abstract for 29409529
Annotation for 29409529
Brat for 29409529
Abstract for 29445374
Annotation for 29445374
Brat for 29445374
Abstract for 29471816
Annotation for 29471816
Brat for 29471816
Abstract for 29499695
Annotation for 29499695
Brat for 29499695
Abstract for 29517586
Annotation for 29517586